Publications

2023

  • P. W. Sweeney, L. Hacker, T. L. Lefebvre, E. L. Brown, J. Gröhl & S. E. Bohndiek. Segmentation of 3D blood vessel networks using unsupervised deep learning. bioRxiv. DOI: https://doi.org/10.1101/2023.04.30.538453.

  • J. Gröhl, T. R. Else, L. Hacker, E. V. Bunce, P. W. Sweeney & S.E. Bohndiek. Moving beyond simulation: data-driven quantitative photo acoustic imaging using tissue-mimicking phantoms. arXiv. DOI: https://doi.org/10.48550/arXiv.2306.06748.

  • E. Brown, A. Guy, N. Holroyd, P.W. Sweeney, L. Gourmet, H. Coleman, C. Walsh, R.J. Shipley, R. Rajendra & S. Walker-Samuel. Physics-informed deep generative learning for quantitative assessment of the retina. bioRxiv. DOI: https://doi.org/10.1101/2023.07.10.548427.

  • L. Hacker, E. L. Brown, T. L. Lefebvre, P. W. Sweeney & S. E. Bohndiek. Performance evaluation of mesoscopic photoacoustic imaging. Photoacoustics; 31: 100505. DOI: https://doi.org/10.1016/j.pacs.2023.100505.

2022

  • E. L. Brown*, T. L. Lefebvre*, P. W. Sweeney*, B. Stolz, J. Gröhl, L. Hacker, Z. Huang, H. A. Harrington, H. M. Byrne & S. E. Bohndiek. Quantification of vascular networks in photoacoustic mesoscopy. Photoacoustics; 26:100357. DOI: https://doi.org/10.1016/j.pacs.2022.100357.

  • P. W. Sweeney, C. Walsh, S. Walker-Samuel & R. J. Shipley. A three-dimensional, discrete-continuum model of blood flow in microvascular networks. bioRxiv. DOI: https://doi.org/10.1101/2022.11.23.517681.

2021

  • H. West*, F. Roberts*, P. Sweeney, S. Walker-Samuel, J. Leedale, H. Colley, C. Murdoch, R. J. Shipley & S. Webb. A mathematical investigation into the uptake kinetics of nanoparticles in vitro. PLOS One; 2021. 16(7): e0254208. DOI: https://doi.org/10.1371/journal.pone.0254208.

  • C. Walsh, N. Holroyd, E. Finnerty, S. G. Ryan, P. W. Sweeney, R. J. Shipley & S. Walker-Samuel. Multi-fluorescence high-resolution episcopic microscopy (MF-HREM) for three dimensional imaging of adult murine organs. Advanced Photonics Research; 2021. p2100110. DOI: https://doi.org/10.1002/adpr.202100110.

2020

  • R. J. Shipley, P. W. Sweeney, S. J. Chapman & T. Roose. A four-compartment multiscale model of fluid and drug distribution in vascular tumours. International Journal for Numerical Methods in Biomedical Engineering; 2020. e3315. DOI: https://doi.org/10.1002/cnm.3315

  • R. J. Shipley, A. F. Smith, P. W. Sweeney, A. R. Pries & T. W. Secomb. A hybrid discrete-continuum approach for modelling microcirculatory blood flow. Mathematical Medicine & Biology; 2020. 37(1): 40-57. DOI: https://doi.org/10.1093/imammb/dqz006

2019

  • P. W. Sweeney, A. d’Esposito, S. Walker-Samuel & R. J. Shipley. Modelling the transport of fluid through heterogeneous, whole tumours in silico. PLOS Computational Biology; 2019. 15(6): e1006751. DOI: https://doi.org/10.1371/journal.pcbi.1006751

2018

  • A. d’Esposito*, P. W. Sweeney*, M. Ali, M. Saleh, R. Ramasawmy, T. A. Roberts, G. Agliardi, A. Desjardins, M. F. Lythgoe, R. B. Pedley, R. J. Shipley* & S. Walker-Samuel*. Computational fluid dynamics with imaging of cleared tissue and of in vivo perfusion predicts drug uptake and treatment responses in tumours. Nature Biomedical Engineering; 2018. 2(10): 773-787. DOI: https://doi.org/10.1038/s41551-018-0306-y

  •  P. W. Sweeney, S. Walker-Samuel & R. J. Shipley. Insights into cerebral haemodynamics and oxygenation utilising in vivo mural cell imaging and mathematical modelling. Scientific Reports; 2018. 8:1373. DOI: https://doi.org/10.1038/s41598-017-19086-z

*Joint first / senior author

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